Variant report

Variant	rs10196449
Chromosome Location	chr2:187051254-187051255
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187046232..187048383-chr2:187048758..187051703,2	MCF-7	breast:

Extended variants
information (count: 228 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:218)

rs_ID	r²[population]
rs10153530	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10173075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173730	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10175720	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10185816	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10185821	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10186061	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10186776	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10189763	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10189831	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10189845	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10189985	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10190713	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10193227	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10193729	0.86[JPT][hapmap]
rs10194241	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195099	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10197403	0.81[ASN][1000 genomes]
rs10200354	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10202553	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10205061	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10205148	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10205245	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10205253	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1026118	0.86[JPT][hapmap]
rs10497667	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10931222	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10931228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10931232	0.89[ASN][1000 genomes]
rs10931241	0.81[ASN][1000 genomes]
rs12233005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12233006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12327903	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12327910	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12328007	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12328015	0.80[ASN][1000 genomes]
rs12373744	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12614595	0.99[ASN][1000 genomes]
rs12615692	0.81[ASN][1000 genomes]
rs12615895	0.99[ASN][1000 genomes]
rs12616722	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617754	0.81[ASN][1000 genomes]
rs12693432	0.81[ASN][1000 genomes]
rs12693434	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12693436	0.83[ASN][1000 genomes]
rs12693437	0.84[ASN][1000 genomes]
rs12993773	0.83[JPT][hapmap]
rs12999474	0.81[ASN][1000 genomes]
rs13022305	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13383010	0.84[ASN][1000 genomes]
rs13383401	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13388196	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389991	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13394129	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13399174	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13401611	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13403908	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13407103	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13416226	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13417379	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13419562	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13420379	0.86[JPT][hapmap]
rs13421172	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13422495	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13424906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425057	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428953	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13429238	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1597244	0.81[ASN][1000 genomes]
rs16827536	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827550	0.96[ASN][1000 genomes]
rs16827554	0.96[ASN][1000 genomes]
rs16827557	0.96[ASN][1000 genomes]
rs16827559	0.96[ASN][1000 genomes]
rs16827564	0.96[ASN][1000 genomes]
rs16827586	0.96[ASN][1000 genomes]
rs16827590	0.94[ASN][1000 genomes]
rs16827599	0.96[ASN][1000 genomes]
rs16827602	0.96[ASN][1000 genomes]
rs16827614	0.92[ASN][1000 genomes]
rs16827774	0.82[ASN][1000 genomes]
rs16827790	0.82[ASN][1000 genomes]
rs16827800	0.80[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1879430	0.89[ASN][1000 genomes]
rs1996506	0.92[ASN][1000 genomes]
rs1996507	0.91[ASN][1000 genomes]
rs1996508	0.92[ASN][1000 genomes]
rs2029085	0.86[ASN][1000 genomes]
rs2370659	0.85[ASN][1000 genomes]
rs2370660	0.90[ASN][1000 genomes]
rs2370661	0.87[JPT][hapmap]
rs2370662	0.89[ASN][1000 genomes]
rs2370668	0.92[ASN][1000 genomes]
rs2370669	0.92[ASN][1000 genomes]
rs2370670	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2370671	0.96[ASN][1000 genomes]
rs2370672	0.96[ASN][1000 genomes]
rs2370674	0.96[ASN][1000 genomes]
rs2370676	0.96[ASN][1000 genomes]
rs2370677	0.98[ASN][1000 genomes]
rs2370678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2370679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2887816	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887817	0.89[ASN][1000 genomes]
rs2887818	0.89[ASN][1000 genomes]
rs3107168	0.89[ASN][1000 genomes]
rs3107170	0.89[ASN][1000 genomes]
rs3107171	0.87[ASN][1000 genomes]
rs3107172	0.93[ASN][1000 genomes]
rs3107173	0.93[ASN][1000 genomes]
rs3107174	0.93[ASN][1000 genomes]
rs3107176	0.90[ASN][1000 genomes]
rs3107410	0.89[ASN][1000 genomes]
rs3107411	0.89[ASN][1000 genomes]
rs3107415	0.92[ASN][1000 genomes]
rs3107416	0.92[ASN][1000 genomes]
rs3107417	0.92[ASN][1000 genomes]
rs3107418	0.92[ASN][1000 genomes]
rs3107419	0.92[ASN][1000 genomes]
rs3107422	0.89[ASN][1000 genomes]
rs3107423	0.89[ASN][1000 genomes]
rs3107424	0.89[ASN][1000 genomes]
rs3107429	0.89[ASN][1000 genomes]
rs3112300	0.93[ASN][1000 genomes]
rs3112304	0.89[ASN][1000 genomes]
rs3112305	0.89[ASN][1000 genomes]
rs3112307	0.89[ASN][1000 genomes]
rs3112308	0.89[ASN][1000 genomes]
rs3112311	0.89[ASN][1000 genomes]
rs3112312	0.89[ASN][1000 genomes]
rs3112316	0.89[ASN][1000 genomes]
rs3112317	0.89[ASN][1000 genomes]
rs3112318	0.93[ASN][1000 genomes]
rs3112319	0.93[ASN][1000 genomes]
rs34064534	0.84[ASN][1000 genomes]
rs34113619	0.98[ASN][1000 genomes]
rs34120118	0.89[ASN][1000 genomes]
rs34133588	0.98[ASN][1000 genomes]
rs34176985	0.99[ASN][1000 genomes]
rs34627487	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34651427	0.96[ASN][1000 genomes]
rs34669814	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34749517	0.89[ASN][1000 genomes]
rs34753519	0.87[ASN][1000 genomes]
rs34916921	0.84[ASN][1000 genomes]
rs35156447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35252434	0.98[ASN][1000 genomes]
rs35298515	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35504474	0.96[ASN][1000 genomes]
rs35511463	0.89[ASN][1000 genomes]
rs35522677	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35567611	0.96[ASN][1000 genomes]
rs35590244	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35652084	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35860748	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35942256	0.98[ASN][1000 genomes]
rs4130833	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4130834	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4264536	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4284795	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4338930	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4386289	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4417686	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4420679	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4442964	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4461230	0.96[ASN][1000 genomes]
rs4493221	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4552153	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4591311	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4591314	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4600605	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4614896	0.98[ASN][1000 genomes]
rs4643502	0.96[ASN][1000 genomes]
rs56309229	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57423042	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57550664	0.86[ASN][1000 genomes]
rs58489224	0.81[ASN][1000 genomes]
rs59252797	0.83[ASN][1000 genomes]
rs59380443	0.89[ASN][1000 genomes]
rs59574892	0.88[ASN][1000 genomes]
rs60534107	0.81[ASN][1000 genomes]
rs60746023	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61558722	0.87[ASN][1000 genomes]
rs61573398	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62199045	0.84[ASN][1000 genomes]
rs66646464	0.81[ASN][1000 genomes]
rs6715226	0.91[JPT][hapmap]
rs6725624	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs67872787	0.82[ASN][1000 genomes]
rs72893418	0.89[ASN][1000 genomes]
rs72893443	0.86[ASN][1000 genomes]
rs72893458	0.86[ASN][1000 genomes]
rs72893482	0.82[ASN][1000 genomes]
rs72895425	0.81[ASN][1000 genomes]
rs72899807	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72899827	0.82[ASN][1000 genomes]
rs72901780	0.83[ASN][1000 genomes]
rs72903616	0.87[ASN][1000 genomes]
rs72903625	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72903626	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72903630	0.87[ASN][1000 genomes]
rs72903638	0.88[ASN][1000 genomes]
rs72905629	0.96[ASN][1000 genomes]
rs72907515	0.89[ASN][1000 genomes]
rs72907517	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72907522	0.89[ASN][1000 genomes]
rs72907524	0.89[ASN][1000 genomes]
rs72907540	0.89[ASN][1000 genomes]
rs72907543	0.87[ASN][1000 genomes]
rs72909485	0.89[ASN][1000 genomes]
rs7559953	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7569990	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7584724	0.96[ASN][1000 genomes]
rs8179713	0.99[ASN][1000 genomes]
rs9288123	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9288124	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1002243	chr2:186692815-187150225	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv536077	chr2:186692815-187150225	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv875548	chr2:186798249-187164657	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1003369	chr2:186980675-187133740	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1014726	chr2:187036909-187213113	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv536078	chr2:187036909-187213113	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187044600-187053600	Weak transcription	Pancreas	Pancrea

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