Variant report

Variant	rs16827790
Chromosome Location	chr2:187240797-187240798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10173075	0.82[ASN][1000 genomes]
rs10186061	0.81[ASN][1000 genomes]
rs10194241	0.82[ASN][1000 genomes]
rs10195099	0.92[ASN][1000 genomes]
rs10196449	0.82[ASN][1000 genomes]
rs1026118	0.86[JPT][hapmap]
rs10497667	0.83[ASN][1000 genomes]
rs10931228	0.81[ASN][1000 genomes]
rs10931232	0.93[ASN][1000 genomes]
rs10931241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12233005	0.81[ASN][1000 genomes]
rs12233006	0.81[ASN][1000 genomes]
rs12614595	0.83[ASN][1000 genomes]
rs12615895	0.83[ASN][1000 genomes]
rs12616722	0.82[ASN][1000 genomes]
rs12622084	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12993773	0.83[JPT][hapmap]
rs13388196	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13399174	0.82[ASN][1000 genomes]
rs13401611	0.82[ASN][1000 genomes]
rs13424906	0.82[ASN][1000 genomes]
rs13425057	0.82[ASN][1000 genomes]
rs13428953	0.82[ASN][1000 genomes]
rs1376781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1597244	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16827536	0.82[ASN][1000 genomes]
rs16827550	0.85[ASN][1000 genomes]
rs16827554	0.85[ASN][1000 genomes]
rs16827557	0.85[ASN][1000 genomes]
rs16827559	0.85[ASN][1000 genomes]
rs16827564	0.85[ASN][1000 genomes]
rs16827586	0.85[ASN][1000 genomes]
rs16827590	0.83[ASN][1000 genomes]
rs16827599	0.85[ASN][1000 genomes]
rs16827602	0.85[ASN][1000 genomes]
rs16827614	0.86[ASN][1000 genomes]
rs16827774	1.00[ASN][1000 genomes]
rs16827800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1879430	0.89[ASN][1000 genomes]
rs1996506	0.90[ASN][1000 genomes]
rs1996507	0.89[ASN][1000 genomes]
rs1996508	0.90[ASN][1000 genomes]
rs2029085	0.96[ASN][1000 genomes]
rs2370659	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2370662	0.93[ASN][1000 genomes]
rs2370668	0.90[ASN][1000 genomes]
rs2370669	0.90[ASN][1000 genomes]
rs2370670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2370671	0.85[ASN][1000 genomes]
rs2370672	0.85[ASN][1000 genomes]
rs2370674	0.85[ASN][1000 genomes]
rs2370676	0.85[ASN][1000 genomes]
rs2370677	0.84[ASN][1000 genomes]
rs2370678	0.82[ASN][1000 genomes]
rs2370679	0.82[ASN][1000 genomes]
rs2370680	0.82[ASN][1000 genomes]
rs2370681	0.81[ASN][1000 genomes]
rs2887816	0.82[ASN][1000 genomes]
rs2887817	0.91[ASN][1000 genomes]
rs2887818	0.91[ASN][1000 genomes]
rs3107168	0.93[ASN][1000 genomes]
rs3107170	0.91[ASN][1000 genomes]
rs3107171	0.89[ASN][1000 genomes]
rs3107172	0.89[ASN][1000 genomes]
rs3107173	0.89[ASN][1000 genomes]
rs3107174	0.89[ASN][1000 genomes]
rs3107176	0.92[ASN][1000 genomes]
rs3107410	0.93[ASN][1000 genomes]
rs3107411	0.93[ASN][1000 genomes]
rs3107415	0.90[ASN][1000 genomes]
rs3107416	0.90[ASN][1000 genomes]
rs3107417	0.90[ASN][1000 genomes]
rs3107418	0.90[ASN][1000 genomes]
rs3107419	0.90[ASN][1000 genomes]
rs3107422	0.91[ASN][1000 genomes]
rs3107423	0.91[ASN][1000 genomes]
rs3107424	0.91[ASN][1000 genomes]
rs3107429	0.91[ASN][1000 genomes]
rs3112300	0.89[ASN][1000 genomes]
rs3112304	0.91[ASN][1000 genomes]
rs3112305	0.91[ASN][1000 genomes]
rs3112307	0.91[ASN][1000 genomes]
rs3112308	0.93[ASN][1000 genomes]
rs3112311	0.93[ASN][1000 genomes]
rs3112312	0.93[ASN][1000 genomes]
rs3112316	0.93[ASN][1000 genomes]
rs3112317	0.93[ASN][1000 genomes]
rs3112318	0.89[ASN][1000 genomes]
rs3112319	0.89[ASN][1000 genomes]
rs34113619	0.84[ASN][1000 genomes]
rs34120118	0.93[ASN][1000 genomes]
rs34133588	0.84[ASN][1000 genomes]
rs34176985	0.83[ASN][1000 genomes]
rs34627487	0.83[ASN][1000 genomes]
rs34651427	0.85[ASN][1000 genomes]
rs35156447	0.82[ASN][1000 genomes]
rs35252434	0.84[ASN][1000 genomes]
rs35298515	0.83[ASN][1000 genomes]
rs35504474	0.85[ASN][1000 genomes]
rs35522677	0.83[ASN][1000 genomes]
rs35567611	0.85[ASN][1000 genomes]
rs35590244	0.83[ASN][1000 genomes]
rs35942256	0.84[ASN][1000 genomes]
rs3754582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4144823	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4284795	0.83[ASN][1000 genomes]
rs4461230	0.85[ASN][1000 genomes]
rs4606885	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4614896	0.84[ASN][1000 genomes]
rs4643502	0.85[ASN][1000 genomes]
rs4667100	0.82[JPT][hapmap]
rs57550664	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs59228985	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59380443	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs59574892	0.92[ASN][1000 genomes]
rs61538288	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62198657	0.90[ASN][1000 genomes]
rs72893418	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs72893443	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72893458	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72893482	1.00[ASN][1000 genomes]
rs72895425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72895447	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72895498	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72897378	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72905629	0.85[ASN][1000 genomes]
rs72907515	0.93[ASN][1000 genomes]
rs72907517	0.92[ASN][1000 genomes]
rs72907522	0.93[ASN][1000 genomes]
rs72907524	0.93[ASN][1000 genomes]
rs72907540	0.93[ASN][1000 genomes]
rs72907543	0.94[ASN][1000 genomes]
rs72909485	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7561955	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7569990	0.83[ASN][1000 genomes]
rs7584724	0.85[ASN][1000 genomes]
rs8179713	0.83[ASN][1000 genomes]
rs9636305	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1006411	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536079	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv428067	chr2:187171324-187334779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv961744	chr2:187189976-187265519	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv3071	chr2:187208040-187252682	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv963887	chr2:187239111-187253365	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187240000-187243600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:187240600-187241200	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr2:187240600-187241400	Enhancers	Placenta	Placenta

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