Variant report

Variant	rs10197534
Chromosome Location	chr2:95671747-95671748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:95666693..95670794-chr2:95671171..95675245,5	K562	blood:

Variant related genes	Relation type
ENSG00000242822	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10200969	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs17120062	0.81[ASN][1000 genomes]
rs35803313	0.82[CEU][hapmap]
rs36045840	0.82[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000661	chr2:95327875-95739468	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1005016	chr2:95327875-95914467	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1003666	chr2:95618109-95772924	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv817258	chr2:95618109-96340788	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:95664400-95690600	Weak transcription	Right Atrium	heart
2	chr2:95664600-95673000	Weak transcription	Spleen	Spleen
3	chr2:95664800-95686200	Enhancers	Fetal Thymus	thymus
4	chr2:95667200-95672000	Weak transcription	Fetal Lung	lung
5	chr2:95669400-95671800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:95669400-95674200	Enhancers	Thymus	Thymus
7	chr2:95670200-95672000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:95670200-95672000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:95670200-95672000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:95670200-95674600	Enhancers	Fetal Heart	heart
11	chr2:95670400-95671800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:95670400-95672600	Enhancers	Primary T cells from cord blood	blood
13	chr2:95670400-95672800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:95670400-95673000	Weak transcription	Left Ventricle	heart
15	chr2:95670400-95674000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:95670400-95674400	Enhancers	Fetal Muscle Leg	muscle
17	chr2:95670800-95672000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr2:95671000-95675800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:95671000-95683800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:95671200-95673600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:95671400-95673200	Bivalent Enhancer	Fetal Stomach	stomach
22	chr2:95671400-95673200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr2:95671400-95673400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr2:95671400-95674200	Enhancers	Fetal Kidney	kidney
25	chr2:95671600-95671800	Enhancers	Pancreas	Pancrea
26	chr2:95671600-95673000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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