Variant report

Variant	rs35803313
Chromosome Location	chr2:95722177-95722178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:95721665-95722794	GM12878	blood:	n/a	n/a
2	RCOR1	chr2:95722150-95722260	HepG2	liver:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:95717464..95720060-chr2:95721874..95723809,2	MCF-7	breast:
2	chr2:95717110..95719318-chr2:95721681..95723671,2	K562	blood:
3	chr2:95718104..95721350-chr2:95721478..95724713,4	K562	blood:
4	chr2:95721270..95722875-chr2:95722918..95725899,2	MCF-7	breast:
5	chr2:95721148..95722660-chr2:95724748..95726802,2	MCF-7	breast:
6	chr2:95688733..95690498-chr2:95720775..95722451,2	MCF-7	breast:
7	chr2:95720619..95723205-chr2:95727451..95729974,2	MCF-7	breast:
8	chr2:95722035..95723837-chr2:95724936..95726737,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000231062	TF binding region
ENSG00000231062	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10197534	0.82[CEU][hapmap]
rs10200969	0.82[CEU][hapmap]
rs11691974	1.00[LWK][hapmap]
rs12479362	1.00[LWK][hapmap]
rs13033750	1.00[CEU][hapmap]
rs17746486	1.00[LWK][hapmap]
rs34738006	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35391246	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36045840	1.00[CEU][hapmap]
rs71427025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000661	chr2:95327875-95739468	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1005016	chr2:95327875-95914467	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1003666	chr2:95618109-95772924	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv817258	chr2:95618109-96340788	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv482276	chr2:95711972-95888406	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:95706200-95723800	Weak transcription	Fetal Kidney	kidney
2	chr2:95709600-95724000	Weak transcription	Pancreas	Pancrea
3	chr2:95714400-95724400	Weak transcription	Gastric	stomach
4	chr2:95716200-95723000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr2:95718000-95723000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr2:95718600-95722600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr2:95718800-95722800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:95719200-95722200	Weak transcription	HMEC	breast
9	chr2:95719400-95724000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr2:95719600-95723200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr2:95719800-95723200	Enhancers	Primary T cells from cord blood	blood
12	chr2:95719800-95723600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:95719800-95723600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:95720200-95722400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:95720200-95722800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:95720400-95722400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr2:95720600-95722600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:95720800-95723600	Enhancers	Brain Cingulate Gyrus	brain
19	chr2:95721200-95722600	Enhancers	Thymus	Thymus
20	chr2:95721200-95723600	Enhancers	Brain Hippocampus Middle	brain
21	chr2:95721400-95722400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr2:95721400-95722800	Enhancers	Esophagus	oesophagus
23	chr2:95721400-95723600	Enhancers	Brain Anterior Caudate	brain
24	chr2:95721400-95723600	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr2:95721400-95723600	Enhancers	Brain Substantia Nigra	brain
26	chr2:95721600-95722600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:95721600-95724000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr2:95721600-95729800	Enhancers	Fetal Thymus	thymus
29	chr2:95721800-95722200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:95721800-95722800	Enhancers	HSMMtube	muscle
31	chr2:95721800-95723800	Enhancers	Brain Angular Gyrus	brain
32	chr2:95721800-95725400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr2:95722000-95722800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:95722000-95723200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr2:95722000-95723200	Enhancers	HSMM	muscle
36	chr2:95722000-95724000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:95722000-95726400	Weak transcription	Dnd41	blood
38	chr2:95722000-95726400	Weak transcription	GM12878-XiMat	blood
39	chr2:95722000-95726600	Flanking Bivalent TSS/Enh	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links