Variant report

Variant	rs10198159
Chromosome Location	chr2:36608511-36608512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36608117..36609788-chr2:36637029..36638848,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10167894	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10178804	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10192912	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11898050	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12712500	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4670144	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4670547	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72863613	0.84[ASN][1000 genomes]
rs72863617	0.84[ASN][1000 genomes]
rs9308991	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9308992	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36599400-36609600	Enhancers	HMEC	breast
3	chr2:36600000-36609000	Genic enhancers	HSMM	muscle
4	chr2:36600400-36612000	Genic enhancers	Osteobl	bone
5	chr2:36600600-36608800	Genic enhancers	Muscle Satellite Cultured Cells	--
6	chr2:36603800-36612600	Weak transcription	Fetal Brain Female	brain
7	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
8	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:36604400-36608600	Genic enhancers	NHEK	skin
10	chr2:36604400-36609400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:36604400-36611200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:36604400-36614000	Weak transcription	HSMMtube	muscle
13	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:36604400-36616400	Weak transcription	Gastric	stomach
17	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
18	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
23	chr2:36604800-36608800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:36604800-36609400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr2:36605400-36609200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:36605400-36610000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:36606000-36608800	Genic enhancers	NH-A	brain
29	chr2:36606400-36608800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:36606600-36609000	Genic enhancers	Placenta	Placenta
31	chr2:36606600-36609000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr2:36606600-36609200	Enhancers	Colonic Mucosa	Colon
33	chr2:36606600-36609400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr2:36606600-36609600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr2:36606600-36609800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:36606600-36610000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr2:36606800-36609400	Enhancers	Fetal Intestine Large	intestine
38	chr2:36607000-36608600	Enhancers	Ovary	ovary
39	chr2:36607000-36608800	Enhancers	Duodenum Mucosa	Duodenum
40	chr2:36607000-36609000	Transcr. at gene 5' and 3'	A549	lung
41	chr2:36607000-36609200	Enhancers	Fetal Heart	heart
42	chr2:36607000-36611600	Genic enhancers	NHLF	lung
43	chr2:36607200-36608600	Genic enhancers	Fetal Stomach	stomach
44	chr2:36607200-36608800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr2:36607200-36608800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
46	chr2:36607200-36609200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:36607200-36609200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr2:36607200-36609200	Enhancers	Spleen	Spleen
49	chr2:36607200-36609400	Genic enhancers	Fetal Intestine Small	intestine
50	chr2:36607200-36609600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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