Variant report

Variant	rs10167894
Chromosome Location	chr2:36606685-36606686
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36605517..36607622-chr2:36658577..36660490,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10178804	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192912	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198159	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11885395	1.00[ASN][1000 genomes]
rs11898050	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712500	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17480064	1.00[ASN][1000 genomes]
rs4670144	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4670545	1.00[ASN][1000 genomes]
rs4670547	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55653640	1.00[ASN][1000 genomes]
rs9308991	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308992	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997602	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36598600-36607000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:36599400-36609600	Enhancers	HMEC	breast
4	chr2:36600000-36607200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:36600000-36609000	Genic enhancers	HSMM	muscle
6	chr2:36600400-36612000	Genic enhancers	Osteobl	bone
7	chr2:36600600-36608800	Genic enhancers	Muscle Satellite Cultured Cells	--
8	chr2:36600800-36607200	Weak transcription	Pancreas	Pancrea
9	chr2:36603200-36607400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr2:36603800-36607200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:36603800-36607600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:36603800-36612600	Weak transcription	Fetal Brain Female	brain
13	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
14	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:36604200-36606800	Genic enhancers	HepG2	liver
16	chr2:36604200-36607200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:36604200-36607400	Weak transcription	Fetal Lung	lung
18	chr2:36604400-36607000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr2:36604400-36607200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:36604400-36607200	Weak transcription	Fetal Stomach	stomach
21	chr2:36604400-36607200	Weak transcription	Spleen	Spleen
22	chr2:36604400-36607400	Weak transcription	Colon Smooth Muscle	Colon
23	chr2:36604400-36607600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr2:36604400-36608000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr2:36604400-36608200	Weak transcription	Esophagus	oesophagus
26	chr2:36604400-36608200	Weak transcription	Right Atrium	heart
27	chr2:36604400-36608400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:36604400-36608600	Genic enhancers	NHEK	skin
29	chr2:36604400-36609400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:36604400-36611200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr2:36604400-36614000	Weak transcription	HSMMtube	muscle
32	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
35	chr2:36604400-36616400	Weak transcription	Gastric	stomach
36	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
37	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr2:36604600-36607000	Weak transcription	Ovary	ovary
40	chr2:36604600-36607200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr2:36604600-36607200	Weak transcription	Left Ventricle	heart
42	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
45	chr2:36604800-36607200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr2:36604800-36607200	Weak transcription	Lung	lung
47	chr2:36604800-36608200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr2:36604800-36608800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:36604800-36609400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum

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