Variant report

Variant	rs11885395
Chromosome Location	chr2:36710331-36710332
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:36701832..36704492-chr2:36708241..36710615,2	MCF-7	breast:
2	chr2:36706502..36708315-chr2:36708724..36710504,2	K562	blood:
3	chr2:36708521..36710689-chr2:36714441..36716853,2	K562	blood:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10167894	1.00[ASN][1000 genomes]
rs10178804	1.00[ASN][1000 genomes]
rs10192912	1.00[ASN][1000 genomes]
rs11898050	1.00[ASN][1000 genomes]
rs12712500	1.00[ASN][1000 genomes]
rs17480064	1.00[ASN][1000 genomes]
rs4670545	1.00[ASN][1000 genomes]
rs4670547	1.00[ASN][1000 genomes]
rs55653640	1.00[ASN][1000 genomes]
rs72797169	1.00[ASN][1000 genomes]
rs9308991	1.00[ASN][1000 genomes]
rs9308992	1.00[ASN][1000 genomes]
rs997602	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv581468	chr2:36687111-36715689	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36687200-36712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:36688600-36725600	Weak transcription	Small Intestine	intestine
3	chr2:36702400-36712000	Genic enhancers	HUVEC	blood vessel
4	chr2:36703200-36710600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:36703200-36712600	Genic enhancers	Osteobl	bone
6	chr2:36703200-36717200	Weak transcription	Brain Substantia Nigra	brain
7	chr2:36703400-36712000	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:36703400-36712800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:36703600-36712400	Genic enhancers	NHDF-Ad	bronchial
10	chr2:36703800-36711600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:36703800-36713400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:36704000-36712000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:36704000-36712200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:36704000-36712600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:36704200-36712400	Strong transcription	Fetal Intestine Large	intestine
16	chr2:36704400-36716200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:36704600-36711600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr2:36704600-36713200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:36704800-36736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr2:36705000-36711000	Weak transcription	Fetal Brain Female	brain
21	chr2:36705000-36743200	Weak transcription	Brain Germinal Matrix	brain
22	chr2:36705200-36710600	Weak transcription	Primary B cells from cord blood	blood
23	chr2:36705200-36710600	Weak transcription	Right Atrium	heart
24	chr2:36705200-36712000	Genic enhancers	NHLF	lung
25	chr2:36705200-36712200	Genic enhancers	Muscle Satellite Cultured Cells	--
26	chr2:36705200-36712200	Weak transcription	Fetal Brain Male	brain
27	chr2:36705200-36713800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:36705800-36711200	Strong transcription	Ovary	ovary
29	chr2:36706000-36711000	Strong transcription	Fetal Lung	lung
30	chr2:36706200-36710800	Strong transcription	Fetal Muscle Leg	muscle
31	chr2:36706200-36711800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr2:36706400-36710400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:36706400-36712000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:36706600-36710800	Strong transcription	NHEK	skin
35	chr2:36706600-36711200	Strong transcription	HMEC	breast
36	chr2:36706800-36711400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:36706800-36712600	Weak transcription	Fetal Thymus	thymus
38	chr2:36707000-36710800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr2:36707000-36711200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr2:36707000-36712400	Genic enhancers	A549	lung
41	chr2:36707000-36740600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:36707200-36711800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr2:36707200-36713000	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr2:36707400-36710600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:36707400-36711000	Weak transcription	Gastric	stomach
46	chr2:36707400-36712200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr2:36707400-36712400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr2:36707400-36716400	Weak transcription	Brain Hippocampus Middle	brain
49	chr2:36707600-36712400	Weak transcription	Fetal Kidney	kidney
50	chr2:36707600-36716600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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