Variant report

Variant	rs72797169
Chromosome Location	chr2:36845951-36845952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36845094..36847827-chr2:36854780..36857434,2	K562	blood:
2	chr2:36823771..36826668-chr2:36844095..36847746,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171055	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11885395	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv2681	chr2:36822990-36848171	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36841600-36846600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:36842800-36847400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:36843600-36846000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:36843600-36846200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:36843800-36846000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr2:36844600-36846400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:36844800-36849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:36845000-36846600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:36845000-36849200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:36845400-36846000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:36845600-36846200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:36845600-36846400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr2:36845800-36846000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr2:36845800-36846000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:36845800-36846000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:36845800-36846000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr2:36845800-36846000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:36845800-36846000	Flanking Active TSS	HepG2	liver
19	chr2:36845800-36846000	Enhancers	Osteobl	bone
20	chr2:36845800-36846200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:36845800-36846400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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