The 2.0 version of rSNPBase

Variant report

Variant rs55653640
Chromosome Location chr2:36684196-36684197
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:36651800-36686800 Weak transcription Colonic Mucosa Colon
2 chr2:36660800-36695600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr2:36666400-36686800 Weak transcription Gastric stomach
4 chr2:36668800-36690200 Genic enhancers Breast Myoepithelial Primary Cells Breast
5 chr2:36669200-36688200 Weak transcription Thymus Thymus
6 chr2:36669400-36688000 Weak transcription Fetal Thymus thymus
7 chr2:36670000-36688200 Weak transcription Primary T cells from cord blood blood
8 chr2:36672800-36688000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr2:36673600-36688000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:36675400-36688000 Weak transcription Placenta Amnion Placenta Amnion
11 chr2:36676600-36685200 Enhancers Fetal Heart heart
12 chr2:36677600-36684800 Genic enhancers HSMMtube muscle
13 chr2:36678000-36688000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
14 chr2:36678400-36688000 Enhancers ES-I3 Cell Line embryonic stem cell
15 chr2:36678800-36685600 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr2:36679000-36684400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr2:36679000-36686200 Strong transcription NHEK skin
18 chr2:36679000-36687600 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr2:36679200-36688400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr2:36679800-36687200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr2:36679800-36704000 Weak transcription Fetal Brain Female brain
22 chr2:36680400-36695600 Weak transcription Primary hematopoietic stem cells blood
23 chr2:36681000-36686600 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr2:36681200-36684200 Enhancers Left Ventricle heart
25 chr2:36681200-36684200 Enhancers Psoas Muscle Psoas
26 chr2:36681400-36684600 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr2:36681600-36685400 Weak transcription Hela-S3 cervix
28 chr2:36682000-36684800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr2:36682000-36684800 Genic enhancers Placenta Placenta
30 chr2:36682000-36684800 Enhancers Fetal Stomach stomach
31 chr2:36682200-36684200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr2:36682200-36684600 Genic enhancers HMEC breast
33 chr2:36682200-36684800 Enhancers Right Ventricle heart
34 chr2:36682200-36685000 Enhancers Cortex derived primary cultured neurospheres brain
35 chr2:36682200-36686200 Enhancers Spleen Spleen
36 chr2:36682400-36687000 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr2:36682400-36688800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
38 chr2:36682600-36684200 Enhancers Brain Substantia Nigra brain
39 chr2:36682600-36684800 Enhancers Fetal Lung lung
40 chr2:36682600-36686000 Strong transcription HepG2 liver
41 chr2:36682600-36686800 Enhancers Fetal Kidney kidney
42 chr2:36682600-36687800 Enhancers HUES6 Cell Line embryonic stem cell
43 chr2:36682800-36684600 Enhancers Skeletal Muscle Female skeletal muscle
44 chr2:36682800-36685400 Enhancers HUES64 Cell Line embryonic stem cell
45 chr2:36682800-36685800 Enhancers Fetal Adrenal Gland Adrenal Gland
46 chr2:36683000-36684200 Enhancers Primary monocytes fromperipheralblood blood
47 chr2:36683000-36684200 Enhancers HSMM muscle
48 chr2:36683000-36684800 Enhancers Fetal Muscle Trunk muscle
49 chr2:36683000-36684800 Enhancers Rectal Mucosa Donor 29 rectum
50 chr2:36683000-36684800 Enhancers Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015