Variant report

Variant	rs10199267
Chromosome Location	chr2:99365179-99365180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99363918..99365909-chr2:99377187..99378693,2	MCF-7	breast:
2	chr2:99358144..99360845-chr2:99364555..99366061,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1016124	0.81[EUR][1000 genomes]
rs10177696	0.88[EUR][1000 genomes]
rs10194177	0.87[EUR][1000 genomes]
rs10460485	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10496332	0.81[EUR][1000 genomes]
rs11123747	0.81[EUR][1000 genomes]
rs11123749	0.81[EUR][1000 genomes]
rs12471383	0.81[EUR][1000 genomes]
rs12477450	0.88[EUR][1000 genomes]
rs12615301	0.81[EUR][1000 genomes]
rs12622931	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13391483	0.81[EUR][1000 genomes]
rs13391794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410406	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428808	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1514916	0.88[EUR][1000 genomes]
rs1913621	0.81[EUR][1000 genomes]
rs28783173	0.81[EUR][1000 genomes]
rs41445250	0.88[EUR][1000 genomes]
rs4851150	0.81[EUR][1000 genomes]
rs4851154	0.81[EUR][1000 genomes]
rs58666702	0.88[EUR][1000 genomes]
rs60024860	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6706340	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6729151	0.83[EUR][1000 genomes]
rs6733957	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6737760	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6740656	0.83[EUR][1000 genomes]
rs6751196	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7420869	0.83[EUR][1000 genomes]
rs7558236	0.81[EUR][1000 genomes]
rs7577636	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7599792	0.81[EUR][1000 genomes]
rs7601040	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv1002315	chr2:99361475-99368975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99348400-99367000	Weak transcription	Esophagus	oesophagus
2	chr2:99359600-99367200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:99359600-99374000	Weak transcription	Aorta	Aorta
4	chr2:99361200-99365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:99361400-99365400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:99361400-99365600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:99361400-99374000	Weak transcription	Pancreas	Pancrea
8	chr2:99362400-99365200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:99362400-99372800	Weak transcription	Primary T cells from cord blood	blood
10	chr2:99363400-99366000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:99364000-99365400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr2:99364000-99365800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr2:99364200-99365200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr2:99364200-99365200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr2:99364200-99365200	Enhancers	Fetal Thymus	thymus
16	chr2:99364200-99365800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:99364200-99366000	Enhancers	Primary B cells from peripheral blood	blood
18	chr2:99364200-99366000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr2:99364200-99366600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr2:99364200-99367200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr2:99364400-99365200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:99364400-99365200	Enhancers	Spleen	Spleen
23	chr2:99364400-99365200	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr2:99364400-99365400	Enhancers	Placenta	Placenta
25	chr2:99364400-99365800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr2:99364400-99365800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr2:99364400-99365800	Flanking Active TSS	GM12878-XiMat	blood
28	chr2:99364400-99366000	Enhancers	HMEC	breast
29	chr2:99364600-99365800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr2:99364800-99365800	Weak transcription	Dnd41	blood
31	chr2:99364800-99367000	Weak transcription	Fetal Muscle Leg	muscle
32	chr2:99364800-99371200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr2:99365000-99365800	Enhancers	Primary B cells from cord blood	blood
34	chr2:99365000-99368200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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