Variant report

Variant	rs6737760
Chromosome Location	chr2:99336044-99336045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:99329459..99332003-chr2:99335709..99337859,2	MCF-7	breast:
2	chr2:99334922..99337052-chr2:99339872..99343548,3	MCF-7	breast:
3	chr2:99334681..99338238-chr2:99344696..99347399,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071073	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1016124	0.81[EUR][1000 genomes]
rs10177696	0.88[EUR][1000 genomes]
rs10194177	0.87[EUR][1000 genomes]
rs10196218	0.84[CHB][hapmap]
rs10199267	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10460485	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10496332	0.81[EUR][1000 genomes]
rs11123747	0.81[EUR][1000 genomes]
rs11123749	0.81[EUR][1000 genomes]
rs12471383	0.81[EUR][1000 genomes]
rs12477450	0.88[EUR][1000 genomes]
rs12615301	0.81[EUR][1000 genomes]
rs12622931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13391483	0.81[EUR][1000 genomes]
rs13391794	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13410406	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13428808	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514916	0.88[EUR][1000 genomes]
rs1913621	0.81[EUR][1000 genomes]
rs28783173	0.81[EUR][1000 genomes]
rs41445250	0.88[EUR][1000 genomes]
rs4851150	0.81[EUR][1000 genomes]
rs4851154	0.81[EUR][1000 genomes]
rs58666702	0.88[EUR][1000 genomes]
rs60024860	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6706340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6729151	0.83[EUR][1000 genomes]
rs6733957	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6740656	0.83[EUR][1000 genomes]
rs6751196	0.87[EUR][1000 genomes]
rs7420869	0.83[EUR][1000 genomes]
rs7558236	0.81[EUR][1000 genomes]
rs7577636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599792	0.81[EUR][1000 genomes]
rs7601040	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv2841	chr2:99296874-99342362	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv535836	chr2:99329084-99353519	Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv535837	chr2:99329084-99358356	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv535838	chr2:99335416-99358356	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99303200-99336400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:99316600-99336400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:99319200-99336800	Weak transcription	Spleen	Spleen
4	chr2:99321000-99336200	Weak transcription	Fetal Stomach	stomach
5	chr2:99321600-99336600	Weak transcription	Fetal Kidney	kidney
6	chr2:99322000-99336800	Weak transcription	Colonic Mucosa	Colon
7	chr2:99322200-99336200	Weak transcription	Fetal Intestine Large	intestine
8	chr2:99324200-99336600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:99325600-99336800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:99326400-99336800	Weak transcription	Aorta	Aorta
11	chr2:99326400-99342600	Weak transcription	Adipose Nuclei	Adipose
12	chr2:99326400-99343600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:99326400-99346400	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:99326600-99336800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:99326600-99336800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:99326600-99336800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:99326600-99340000	Weak transcription	Brain Angular Gyrus	brain
18	chr2:99326800-99336600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:99326800-99336600	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:99326800-99336800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr2:99326800-99337000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:99326800-99342600	Weak transcription	Liver	Liver
23	chr2:99326800-99343800	Weak transcription	Small Intestine	intestine
24	chr2:99327200-99336800	Weak transcription	Brain Anterior Caudate	brain
25	chr2:99328400-99336600	Weak transcription	Primary B cells from cord blood	blood
26	chr2:99328400-99336800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr2:99328600-99336600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:99328600-99336800	Weak transcription	Left Ventricle	heart
29	chr2:99328800-99337000	Weak transcription	Psoas Muscle	Psoas
30	chr2:99329400-99336600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr2:99329600-99339600	Weak transcription	Right Atrium	heart
32	chr2:99330600-99336600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr2:99330800-99336400	Genic enhancers	Primary T cells fromperipheralblood	blood
34	chr2:99330800-99336400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:99331200-99337400	Weak transcription	HUVEC	blood vessel
36	chr2:99332600-99336200	Strong transcription	Fetal Intestine Small	intestine
37	chr2:99332600-99337200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr2:99333000-99336400	Genic enhancers	Primary T cells from cord blood	blood
39	chr2:99333000-99336400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr2:99333000-99342800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr2:99333200-99336600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr2:99333400-99337400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr2:99334000-99339400	Strong transcription	Dnd41	blood
44	chr2:99334200-99343200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr2:99334400-99339400	Weak transcription	Esophagus	oesophagus
46	chr2:99334800-99337200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr2:99335000-99336400	Weak transcription	Stomach Mucosa	stomach
48	chr2:99335200-99336600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:99335200-99336800	Weak transcription	HepG2	liver
50	chr2:99335200-99343600	Weak transcription	Stomach Smooth Muscle	stomach

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