Variant report

Variant	rs10199796
Chromosome Location	chr2:115891114-115891115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10169096	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10184481	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12328314	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12615811	0.81[ASN][1000 genomes]
rs13397884	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58032454	0.80[ASN][1000 genomes]
rs72837525	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3382065	chr2:115889932-115891880	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115882200-115892400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:115887400-115892600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:115887600-115893200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:115887600-115893400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:115887800-115891200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:115889200-115891600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:115889800-115891400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:115889800-115891600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:115890200-115893400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:115890400-115893200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:115891000-115891400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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