Variant report

Variant	rs72837525
Chromosome Location	chr2:115893764-115893765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10169096	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10199796	0.81[EUR][1000 genomes]
rs11900572	0.96[EUR][1000 genomes]
rs12328314	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13416481	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17044162	0.86[EUR][1000 genomes]
rs17355518	1.00[AFR][1000 genomes]
rs56317001	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58110812	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62164531	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs62164539	0.82[AMR][1000 genomes]
rs72837554	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115893000-115894400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:115893200-115893800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:115893200-115894000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:115893200-115894000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:115893200-115894000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:115893200-115894200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:115893400-115894000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr2:115893400-115894000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:115893400-115894200	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links