Variant report

Variant	rs13416481
Chromosome Location	chr2:115900885-115900886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11900572	0.98[EUR][1000 genomes]
rs17044162	0.85[EUR][1000 genomes]
rs56317001	0.81[EUR][1000 genomes]
rs58110812	0.91[EUR][1000 genomes]
rs72837525	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72837554	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115896400-115902400	Weak transcription	Fetal Intestine Small	intestine
2	chr2:115898600-115902200	Weak transcription	Fetal Intestine Large	intestine
3	chr2:115900400-115903400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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