Variant report

Variant	rs10199928
Chromosome Location	chr2:141491320-141491321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10180315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10207124	1.00[CEU][hapmap];0.83[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs10209458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11888646	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs11890215	1.00[CEU][hapmap];0.83[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs11900908	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs11900955	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs11901574	0.95[EUR][1000 genomes]
rs11902768	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12691557	1.00[CEU][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13010697	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13383867	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs13385409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13407299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs13411355	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13422197	0.95[EUR][1000 genomes]
rs13431727	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs1372253	1.00[CEU][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs1441450	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1441457	0.95[EUR][1000 genomes]
rs16844555	1.00[CEU][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs17513652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2380914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34492262	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34914136	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs436323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs448816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs6749187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs72907443	0.95[EUR][1000 genomes]
rs7570942	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875195	chr2:141407101-141542081	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875198	chr2:141409166-141571329	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875200	chr2:141448312-141504719	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875201	chr2:141448312-141561255	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv875202	chr2:141448312-141587228	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv875203	chr2:141448312-141592252	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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