Variant report

Variant	rs448816
Chromosome Location	chr2:141480131-141480132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10180315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10199928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs10207124	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs10209458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11888646	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs11890215	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs11900908	0.91[CEU][hapmap];0.80[JPT][hapmap]
rs11900955	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs11901574	0.97[EUR][1000 genomes]
rs11902768	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12691557	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13010697	1.00[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13383867	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs13385409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13407299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13411355	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13422197	0.97[EUR][1000 genomes]
rs13431727	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs1372253	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[TSI][hapmap]
rs1441450	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1441457	0.97[EUR][1000 genomes]
rs16844555	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[TSI][hapmap]
rs17513652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[TSI][hapmap]
rs2380914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34492262	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34914136	0.99[EUR][1000 genomes]
rs436323	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.95[YRI][hapmap]
rs6749187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];0.94[TSI][hapmap]
rs72907443	0.97[EUR][1000 genomes]
rs7570942	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875195	chr2:141407101-141542081	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875198	chr2:141409166-141571329	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv583196	chr2:141426714-141487897	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459540	chr2:141428751-141487897	Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv459552	chr2:141428751-141487897	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv583197	chr2:141428751-141487897	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv875200	chr2:141448312-141504719	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv875201	chr2:141448312-141561255	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv875202	chr2:141448312-141587228	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv875203	chr2:141448312-141592252	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links