Variant report

Variant	rs10200671
Chromosome Location	chr2:142442487-142442488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10177354	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap]
rs10195330	0.82[ASN][1000 genomes]
rs10203762	0.92[ASN][1000 genomes]
rs10928119	0.92[ASN][1000 genomes]
rs11885368	0.90[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs11891104	0.91[CHB][hapmap];0.91[CHD][hapmap];0.90[ASN][1000 genomes]
rs11896157	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[ASN][1000 genomes]
rs1191700	0.89[YRI][hapmap]
rs12373690	0.92[ASN][1000 genomes]
rs12373842	0.92[ASN][1000 genomes]
rs12613378	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12614785	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs12622890	0.92[ASN][1000 genomes]
rs13386614	0.92[ASN][1000 genomes]
rs13390324	0.92[ASN][1000 genomes]
rs13400579	0.89[ASN][1000 genomes]
rs13412600	0.90[ASN][1000 genomes]
rs13412704	0.90[ASN][1000 genomes]
rs1437342	0.90[ASN][1000 genomes]
rs1437351	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs164975	0.86[ASW][hapmap];0.92[LWK][hapmap];0.86[MKK][hapmap];0.93[YRI][hapmap]
rs164978	0.83[YRI][hapmap]
rs164979	0.83[YRI][hapmap]
rs16846899	0.90[ASN][1000 genomes]
rs16846913	0.90[ASN][1000 genomes]
rs173323	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2028130	0.85[YRI][hapmap]
rs2028131	0.90[ASN][1000 genomes]
rs2028133	0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs2118276	0.86[ASW][hapmap];0.85[YRI][hapmap]
rs2164700	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs2196599	0.95[CHB][hapmap];0.95[CHD][hapmap];0.92[ASN][1000 genomes]
rs2381155	0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs354853	0.86[YRI][hapmap]
rs354855	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs355539	0.83[JPT][hapmap]
rs355545	0.89[YRI][hapmap]
rs355547	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs355553	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs355556	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs355569	0.83[JPT][hapmap]
rs41493149	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs4427957	0.82[YRI][hapmap]
rs4954922	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6751890	0.85[YRI][hapmap]
rs7563507	1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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