Variant report

Variant	rs355556
Chromosome Location	chr2:142438931-142438932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142432833..142434470-chr2:142438511..142441100,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10177354	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10195330	0.81[ASN][1000 genomes]
rs10200671	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs10203762	0.93[ASN][1000 genomes]
rs10928119	0.92[ASN][1000 genomes]
rs11885368	0.80[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs11891104	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs11896157	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs1191700	0.83[YRI][hapmap]
rs12373690	0.92[ASN][1000 genomes]
rs12373842	0.92[ASN][1000 genomes]
rs12613378	0.85[CHB][hapmap];0.92[ASN][1000 genomes]
rs12614785	0.84[ASN][1000 genomes]
rs12622890	0.92[ASN][1000 genomes]
rs13386614	0.91[ASN][1000 genomes]
rs13390324	0.92[ASN][1000 genomes]
rs13400579	0.88[ASN][1000 genomes]
rs13410976	0.83[JPT][hapmap]
rs13412600	0.89[ASN][1000 genomes]
rs13412704	0.89[ASN][1000 genomes]
rs1437342	0.89[ASN][1000 genomes]
rs1437351	0.95[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap]
rs164975	0.86[YRI][hapmap]
rs164978	0.83[YRI][hapmap]
rs164979	0.82[YRI][hapmap]
rs16846899	0.91[ASN][1000 genomes]
rs16846913	0.89[ASN][1000 genomes]
rs173323	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2028131	0.89[ASN][1000 genomes]
rs2028133	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs2164700	0.85[ASN][1000 genomes]
rs2196599	0.85[CHB][hapmap];0.92[ASN][1000 genomes]
rs2381155	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs354853	0.83[YRI][hapmap]
rs354855	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs355545	0.83[YRI][hapmap]
rs355547	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs355553	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs41493149	0.85[CHB][hapmap]
rs4954922	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs7563507	0.90[CHB][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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