Variant report

Variant	rs10200873
Chromosome Location	chr2:187318187-187318188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10804005	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10931247	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11685403	0.82[ASN][1000 genomes]
rs11891731	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1375323	0.82[ASN][1000 genomes]
rs16827719	0.82[ASN][1000 genomes]
rs1868384	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2099849	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2119861	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2370663	0.82[ASN][1000 genomes]
rs4144784	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4365424	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55770081	0.82[ASN][1000 genomes]
rs57092996	0.82[ASN][1000 genomes]
rs57995640	0.82[ASN][1000 genomes]
rs58300265	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59376280	0.82[ASN][1000 genomes]
rs60201574	0.81[ASN][1000 genomes]
rs66647013	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6741214	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72895450	0.87[EUR][1000 genomes]
rs72897347	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035219	0.82[ASN][1000 genomes]
rs73035226	0.82[ASN][1000 genomes]
rs73035248	0.82[ASN][1000 genomes]
rs73035254	0.82[ASN][1000 genomes]
rs73035266	0.82[ASN][1000 genomes]
rs73035270	0.82[ASN][1000 genomes]
rs73035271	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv428067	chr2:187171324-187334779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1005680	chr2:187244500-187320653	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536080	chr2:187244500-187320653	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1001927	chr2:187264940-187325667	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv997835	chr2:187265730-187327561	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv536081	chr2:187265730-187327561	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187293800-187322000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:187297800-187331200	Weak transcription	Left Ventricle	heart
3	chr2:187299600-187319600	Weak transcription	Adipose Nuclei	Adipose
4	chr2:187299600-187322800	Weak transcription	Aorta	Aorta
5	chr2:187301400-187321000	Weak transcription	Primary T cells from cord blood	blood
6	chr2:187301400-187322600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:187301600-187322600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:187302200-187319600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr2:187302200-187323200	Weak transcription	Ovary	ovary
10	chr2:187302600-187321200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:187303800-187323000	Weak transcription	Primary B cells from cord blood	blood
12	chr2:187304600-187322800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:187305400-187318800	Weak transcription	Fetal Intestine Small	intestine
14	chr2:187308000-187323800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:187308400-187322800	Weak transcription	Fetal Intestine Large	intestine
16	chr2:187308800-187323000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:187309000-187321800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr2:187309200-187318600	Weak transcription	HepG2	liver
19	chr2:187309400-187320000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:187309400-187322600	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:187310600-187319600	Weak transcription	Liver	Liver
22	chr2:187313400-187322800	Weak transcription	Psoas Muscle	Psoas
23	chr2:187313600-187327000	Weak transcription	Pancreas	Pancrea
24	chr2:187315200-187322800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:187315600-187330800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:187315800-187322800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:187316200-187322800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr2:187316400-187321400	Weak transcription	Brain Anterior Caudate	brain
29	chr2:187317000-187323000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:187317200-187322400	Weak transcription	Spleen	Spleen
31	chr2:187317800-187319600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:187317800-187320200	Weak transcription	Fetal Stomach	stomach
33	chr2:187317800-187323000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr2:187318000-187322800	Weak transcription	Brain Angular Gyrus	brain

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