Variant report

Variant	rs72895450
Chromosome Location	chr2:187271502-187271503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10200873	0.87[EUR][1000 genomes]
rs10497668	0.91[ASN][1000 genomes]
rs10804005	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1375323	0.91[ASN][1000 genomes]
rs16827526	0.85[ASN][1000 genomes]
rs16827529	0.85[ASN][1000 genomes]
rs16827624	0.84[ASN][1000 genomes]
rs16827719	0.91[ASN][1000 genomes]
rs17332860	0.82[ASN][1000 genomes]
rs1868384	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2119861	0.84[EUR][1000 genomes]
rs2370663	0.91[ASN][1000 genomes]
rs4365424	0.88[EUR][1000 genomes]
rs4544390	0.87[EUR][1000 genomes]
rs55739229	0.84[ASN][1000 genomes]
rs55770081	0.91[ASN][1000 genomes]
rs56341233	0.85[ASN][1000 genomes]
rs56660382	0.82[ASN][1000 genomes]
rs57092996	0.91[ASN][1000 genomes]
rs57995640	0.91[ASN][1000 genomes]
rs58300265	0.86[EUR][1000 genomes]
rs59376280	0.91[ASN][1000 genomes]
rs60201574	0.89[ASN][1000 genomes]
rs66647013	0.86[EUR][1000 genomes]
rs6730232	0.94[ASN][1000 genomes]
rs72897347	0.88[EUR][1000 genomes]
rs73033491	0.84[ASN][1000 genomes]
rs73033500	0.87[ASN][1000 genomes]
rs73035219	0.91[ASN][1000 genomes]
rs73035226	0.91[ASN][1000 genomes]
rs73035248	0.91[ASN][1000 genomes]
rs73035254	0.91[ASN][1000 genomes]
rs73035266	0.91[ASN][1000 genomes]
rs73035270	0.91[ASN][1000 genomes]
rs73035271	0.91[ASN][1000 genomes]
rs73037534	0.91[ASN][1000 genomes]
rs73980878	0.85[ASN][1000 genomes]
rs7572647	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1006411	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536079	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428067	chr2:187171324-187334779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1005680	chr2:187244500-187320653	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv536080	chr2:187244500-187320653	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1001927	chr2:187264940-187325667	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv997835	chr2:187265730-187327561	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv536081	chr2:187265730-187327561	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187265200-187277400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:187271200-187275400	Weak transcription	Fetal Intestine Small	intestine

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