Variant report

Variant	rs10201280
Chromosome Location	chr2:141479958-141479959
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10177120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10203227	0.87[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10439180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs11685066	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12466110	0.80[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs13419407	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1372255	0.87[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1441452	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap]
rs1441455	0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1441458	0.84[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1441459	0.81[CEU][hapmap]
rs1441460	0.87[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2046507	0.88[CEU][hapmap]
rs2119610	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs288105	0.87[CEU][hapmap]
rs288110	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs288112	0.83[CEU][hapmap]
rs382721	0.80[CEU][hapmap]
rs41372951	0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap]
rs4954852	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs726340	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs72925887	0.85[ASN][1000 genomes]
rs7596671	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9287299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs989308	0.91[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875195	chr2:141407101-141542081	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875198	chr2:141409166-141571329	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv583196	chr2:141426714-141487897	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv459540	chr2:141428751-141487897	Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv459552	chr2:141428751-141487897	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv583197	chr2:141428751-141487897	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv875200	chr2:141448312-141504719	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv875201	chr2:141448312-141561255	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv875202	chr2:141448312-141587228	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv875203	chr2:141448312-141592252	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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