Variant report

Variant	rs13419407
Chromosome Location	chr2:141475973-141475974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141469791..141471888-chr2:141475142..141477938,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10177120	0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10201280	0.88[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10203227	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs10439180	0.87[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11685066	0.81[ASN][1000 genomes]
rs12466110	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12624056	0.80[CEU][hapmap]
rs1372255	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap]
rs1441452	0.88[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs1441455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap]
rs1441458	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1441459	0.92[CEU][hapmap];0.80[YRI][hapmap]
rs1441460	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs167011	0.81[CEU][hapmap]
rs185959	0.91[CEU][hapmap]
rs2046507	1.00[CEU][hapmap]
rs2119610	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs2165506	0.82[CHB][hapmap]
rs2218242	0.91[CEU][hapmap]
rs288110	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs288111	0.80[CEU][hapmap]
rs288112	0.91[CEU][hapmap]
rs382721	0.92[CEU][hapmap]
rs387927	0.91[CEU][hapmap]
rs41372951	0.84[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap]
rs4954852	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6746848	0.82[CHB][hapmap]
rs726340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap]
rs72925887	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7596671	0.92[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9287299	0.87[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs989308	0.95[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875195	chr2:141407101-141542081	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv875197	chr2:141409166-141478468	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875198	chr2:141409166-141571329	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv583196	chr2:141426714-141487897	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv459540	chr2:141428751-141487897	Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv459552	chr2:141428751-141487897	Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv583197	chr2:141428751-141487897	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv875200	chr2:141448312-141504719	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv875201	chr2:141448312-141561255	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv875202	chr2:141448312-141587228	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv875203	chr2:141448312-141592252	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141475400-141477400	Enhancers	Pancreatic Islets	Pancreatic Islet

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