Variant report

Variant	rs10201581
Chromosome Location	chr2:86925213-86925214
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86921307..86924428-chr2:86924488..86929340,5	MCF-7	breast:
2	chr2:86670537..86672265-chr2:86924211..86926595,2	MCF-7	breast:
3	chr2:86848333..86851017-chr2:86924313..86926043,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249884	Chromatin interaction
ENSG00000239305	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10175293	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10177148	0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes]
rs10197244	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207306	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10207541	0.90[JPT][hapmap];1.00[AFR][1000 genomes]
rs10208436	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12467185	1.00[AFR][1000 genomes]
rs12476889	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12477946	0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13410422	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411177	0.90[ASN][1000 genomes]
rs13412314	0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes]
rs13413566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13416756	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[ASN][1000 genomes]
rs13430105	1.00[AFR][1000 genomes]
rs13431959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28528854	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28662199	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28851847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28889570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4402760	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716259	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[MEX][hapmap]
rs6735599	0.90[ASN][1000 genomes]
rs7349247	0.90[ASN][1000 genomes]
rs7420475	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7570057	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577266	0.84[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86923200-86932800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:86924400-86925400	Enhancers	Stomach Mucosa	stomach
3	chr2:86924600-86925400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:86924600-86925600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:86925000-86925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:86925000-86930200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:86925000-86930200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:86925000-86930200	Weak transcription	HMEC	breast
9	chr2:86925200-86925400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:86925200-86929400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:86925200-86930200	Weak transcription	NHEK	skin

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