Variant report
| Variant | rs7420475 |
|---|---|
| Chromosome Location | chr2:86872664-86872665 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10175293 | 0.82[AMR][1000 genomes] |
| rs10177148 | 0.88[MEX][hapmap];1.00[AFR][1000 genomes] |
| rs10197244 | 0.92[AMR][1000 genomes] |
| rs10201581 | 0.88[MEX][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs10207306 | 1.00[AFR][1000 genomes] |
| rs10207541 | 1.00[AFR][1000 genomes] |
| rs10208436 | 1.00[AFR][1000 genomes] |
| rs12467185 | 1.00[JPT][hapmap];1.00[AFR][1000 genomes] |
| rs12476889 | 1.00[AFR][1000 genomes] |
| rs12477946 | 0.88[MEX][hapmap] |
| rs13410422 | 0.85[AMR][1000 genomes] |
| rs13412314 | 0.88[MEX][hapmap];1.00[AFR][1000 genomes] |
| rs13413566 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs13416756 | 0.88[MEX][hapmap] |
| rs13430105 | 1.00[AFR][1000 genomes] |
| rs13431959 | 0.92[AMR][1000 genomes] |
| rs28851847 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs28889570 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs4402760 | 0.85[AMR][1000 genomes] |
| rs6716259 | 0.88[MEX][hapmap] |
| rs7570057 | 0.82[AMR][1000 genomes] |
| rs7577266 | 0.88[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532724 | chr2:86622295-87086407 | Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011590 | chr2:86824181-86906114 | Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:86872400-86873200 | Enhancers | Placenta Amnion | Placenta Amnion |
