Variant report

Variant	rs10201670
Chromosome Location	chr2:54983725-54983726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13390196	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13396649	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13401661	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13412839	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13422751	0.84[ASN][1000 genomes]
rs17046283	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17046292	0.96[ASN][1000 genomes]
rs2033414	0.87[ASN][1000 genomes]
rs2033415	0.87[ASN][1000 genomes]
rs4671974	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4671976	0.87[ASN][1000 genomes]
rs59516754	0.87[ASN][1000 genomes]
rs62136877	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6712305	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7565441	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868700	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9711112	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv582024	chr2:54894649-54999712	Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54982200-54986400	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:54983000-54983800	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr2:54983000-54984800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:54983400-54984400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:54983400-54984400	Weak transcription	Thymus	Thymus
6	chr2:54983400-54984600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:54983400-54984600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:54983400-54984800	Enhancers	GM12878-XiMat	blood
9	chr2:54983600-54984600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr2:54983600-54984600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:54983600-54984600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:54983600-54984600	Weak transcription	NHEK	skin
13	chr2:54983600-54985600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:54983600-54991600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links