Variant report

Variant	rs7565441
Chromosome Location	chr2:54972161-54972162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10201670	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13390196	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13396649	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13401661	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13412839	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13422751	0.85[ASN][1000 genomes]
rs17046283	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046292	0.95[ASN][1000 genomes]
rs2033414	0.86[ASN][1000 genomes]
rs2033415	0.86[ASN][1000 genomes]
rs4671974	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4671976	0.84[ASN][1000 genomes]
rs59516754	0.86[ASN][1000 genomes]
rs62136877	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6712305	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868700	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9711112	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv582024	chr2:54894649-54999712	Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv582025	chr2:54960680-54973834	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54967200-54977200	Weak transcription	Pancreas	Pancrea
2	chr2:54969400-54972800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:54969600-54975400	Weak transcription	HepG2	liver
4	chr2:54970400-54973000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:54970400-54974800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:54970400-54975600	Weak transcription	Gastric	stomach
7	chr2:54971800-54974000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links