Variant report

Variant	rs10202865
Chromosome Location	chr2:234587707-234587708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10167119	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10168155	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10168333	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10168416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10171367	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10173355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10175809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10179094	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10189426	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10197460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10445704	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10929302	0.81[CEU][hapmap]
rs1105879	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1105880	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11680450	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11695484	0.80[CEU][hapmap]
rs11902131	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12615708	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12623271	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13002774	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13015720	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17862875	0.80[CEU][hapmap]
rs17863787	0.95[CEU][hapmap]
rs2070959	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2602376	0.90[CEU][hapmap]
rs2741044	0.90[CEU][hapmap]
rs2741045	0.90[CEU][hapmap]
rs2741046	0.90[CEU][hapmap]
rs28899170	1.00[CEU][hapmap]
rs4148324	0.90[CEU][hapmap]
rs4148325	0.90[CEU][hapmap]
rs4261716	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4347832	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4553819	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6714634	0.80[CEU][hapmap]
rs6722076	0.85[CEU][hapmap]
rs6724485	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6736508	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6736743	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6742078	0.90[CEU][hapmap]
rs6744284	0.85[CEU][hapmap]
rs6753320	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6753569	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6759892	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7349250	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7563561	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7571915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7577677	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7586110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7608175	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs887829	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv428072	chr2:234393609-234624769	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1010936	chr2:234549011-234640221	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3340677	chr2:234580879-234591324	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234554600-234587800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:234559800-234592800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:234585400-234588000	Weak transcription	A549	lung
4	chr2:234585600-234589000	Weak transcription	Liver	Liver

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