Variant report

Variant	rs10203181
Chromosome Location	chr2:59034168-59034169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10865309	0.87[ASN][1000 genomes]
rs12475168	0.87[ASN][1000 genomes]
rs12611943	0.87[ASN][1000 genomes]
rs12613375	0.87[ASN][1000 genomes]
rs12614932	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62144560	0.87[ASN][1000 genomes]
rs62144565	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6724402	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59033200-59034800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:59033200-59035000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:59033800-59034400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:59033800-59034800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:59034000-59034800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:59034000-59034800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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