Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:58970439..58972062-chr2:58982285..58984412,2	K562	blood:
2	chr2:58955913..58957492-chr2:58983881..58985708,2	K562	blood:
3	chr2:58982401..58985260-chr2:58985275..58987242,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10176091	0.88[ASN][1000 genomes]
rs10203181	0.87[ASN][1000 genomes]
rs10865309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12475168	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12611943	0.82[ASN][1000 genomes]
rs12614932	0.91[ASN][1000 genomes]
rs12618115	0.85[ASN][1000 genomes]
rs12619538	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1641155	0.81[ASN][1000 genomes]
rs17049709	0.86[ASN][1000 genomes]
rs17049722	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1796435	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2540324	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2540325	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62142340	0.85[ASN][1000 genomes]
rs62142342	0.86[ASN][1000 genomes]
rs62144560	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62144565	0.85[ASN][1000 genomes]
rs6724402	0.83[ASN][1000 genomes]
rs6747219	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58980400-58984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:58983200-58984800	Enhancers	Brain Germinal Matrix	brain
3	chr2:58983200-58985000	Enhancers	K562	blood
4	chr2:58983200-58986200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:58984000-58984200	Enhancers	Brain Hippocampus Middle	brain
6	chr2:58984000-58984400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:58984000-58984800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:58984000-58986400	Enhancers	Primary hematopoietic stem cells	blood

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