Variant report

Variant	rs10203272
Chromosome Location	chr2:86033879-86033880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86029942..86032229-chr2:86033484..86035418,2	K562	blood:
2	chr2:85954466..85957805-chr2:86032452..86035127,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199687	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11679726	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13392384	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13400884	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57356103	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58320050	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6726470	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738956	0.85[JPT][hapmap]
rs6754806	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86024400-86037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:86024400-86037600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:86024600-86043600	Weak transcription	Right Ventricle	heart
4	chr2:86024800-86038000	Weak transcription	Ovary	ovary
5	chr2:86025400-86037600	Weak transcription	Right Atrium	heart
6	chr2:86027000-86038000	Weak transcription	Left Ventricle	heart
7	chr2:86027200-86037600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:86028600-86037200	Weak transcription	Fetal Lung	lung
9	chr2:86028800-86039000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:86029000-86040800	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
12	chr2:86030000-86037600	Weak transcription	Aorta	Aorta
13	chr2:86030600-86037600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:86032000-86035400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:86032200-86037400	Weak transcription	Fetal Heart	heart
16	chr2:86032200-86037600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:86032600-86037800	Weak transcription	HSMM	muscle
18	chr2:86032800-86038000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:86033000-86034000	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr2:86033000-86034400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr2:86033000-86035000	Enhancers	HepG2	liver
22	chr2:86033200-86034200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr2:86033400-86034000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr2:86033400-86035400	Enhancers	Liver	Liver
25	chr2:86033400-86037600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:86033600-86034000	Enhancers	Primary B cells from cord blood	blood
27	chr2:86033800-86034200	Enhancers	Fetal Intestine Small	intestine
28	chr2:86033800-86034200	Enhancers	Gastric	stomach
29	chr2:86033800-86034200	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr2:86033800-86034200	Weak transcription	Stomach Mucosa	stomach
31	chr2:86033800-86034400	Enhancers	A549	lung
32	chr2:86033800-86035200	Enhancers	Pancreas	Pancrea

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