Variant report

Variant	rs10203429
Chromosome Location	chr2:172086939-172086940
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172016272..172018929-chr2:172086731..172089635,2	MCF-7	breast:
2	chr2:172085476..172087498-chr2:172088144..172089896,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198586	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10169565	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10179563	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10179755	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10188041	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10193428	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10200190	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10203448	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12104490	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12475659	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12476502	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13382841	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13391119	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13391878	0.92[EUR][1000 genomes]
rs13413830	0.84[EUR][1000 genomes]
rs13420362	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13420513	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13420514	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13423781	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13430050	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16859221	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28510750	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs28648794	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs28695385	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28761317	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28804212	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28822687	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs58470363	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61553554	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172084400-172091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:172086200-172087800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:172086400-172087600	Active TSS	Placenta	Placenta
4	chr2:172086600-172087200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:172086800-172088000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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