Variant report

Variant	rs28695385
Chromosome Location	chr2:172077525-172077526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10169565	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10179563	1.00[EUR][1000 genomes]
rs10179755	0.84[EUR][1000 genomes]
rs10188041	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10193428	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10200190	0.84[EUR][1000 genomes]
rs10203429	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10203448	1.00[EUR][1000 genomes]
rs12104490	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12475659	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12476502	1.00[EUR][1000 genomes]
rs13382841	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13391119	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13391878	0.92[EUR][1000 genomes]
rs13413830	0.84[EUR][1000 genomes]
rs13420362	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13420513	1.00[EUR][1000 genomes]
rs13420514	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13423781	1.00[EUR][1000 genomes]
rs13430050	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16859221	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28510750	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28648794	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28761317	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28804212	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28822687	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58470363	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61553554	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172073600-172081600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172077200-172078200	Weak transcription	K562	blood
3	chr2:172077200-172083600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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