Variant report
Variant | rs10203643 |
---|---|
Chromosome Location | chr2:64571011-64571012 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
1
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000238201 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10182618 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs10865345 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11683866 | 0.87[CHB][hapmap] |
rs1365475 | 0.87[CHB][hapmap] |
rs1426698 | 1.00[CHB][hapmap] |
rs1426699 | 0.87[CHB][hapmap] |
rs1426701 | 0.87[CHB][hapmap] |
rs1426702 | 0.87[CHB][hapmap] |
rs2059630 | 0.87[CHB][hapmap] |
rs2162380 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4343453 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4671561 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs4671562 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4671563 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs919122 | 0.87[CHB][hapmap] |
rs919126 | 0.82[CEU][hapmap];0.85[MEX][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1013132 | chr2:64235175-64631084 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
2 | nsv1006553 | chr2:64339907-64764771 | Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 52 gene(s) | inside rSNPs | diseases |
3 | nsv1005492 | chr2:64452441-64588323 | Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 29 gene(s) | inside rSNPs | diseases |
4 | nsv834244 | chr2:64480943-64646259 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
5 | esv3407522 | chr2:64570548-64574546 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:64568400-64575800 | Weak transcription | Fetal Muscle Leg | muscle |
2 | chr2:64569000-64572400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |