Variant report

Variant	rs4671563
Chromosome Location	chr2:64575738-64575739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10182618	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10186283	0.88[AFR][1000 genomes]
rs10203643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865345	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11683866	0.87[CHB][hapmap]
rs1365475	0.87[CHB][hapmap]
rs1426698	1.00[CHB][hapmap]
rs1426699	0.87[CHB][hapmap]
rs1426701	0.87[CHB][hapmap]
rs1426702	0.87[CHB][hapmap]
rs2059630	0.87[CHB][hapmap]
rs2162380	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4343453	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4671561	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4671562	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs919122	0.87[CHB][hapmap]
rs919126	0.82[CEU][hapmap];0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013132	chr2:64235175-64631084	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1006553	chr2:64339907-64764771	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005492	chr2:64452441-64588323	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
4	nsv834244	chr2:64480943-64646259	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv874238	chr2:64575738-64614241	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4671563	AHSA2	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64568400-64575800	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:64572600-64581800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:64573800-64576000	Weak transcription	A549	lung
4	chr2:64575000-64576400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:64575200-64576600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:64575400-64576000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:64575400-64576000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:64575400-64576200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:64575400-64576200	Enhancers	NH-A	brain
10	chr2:64575400-64576400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:64575400-64576600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:64575400-64576800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:64575400-64576800	Enhancers	NHLF	lung
14	chr2:64575600-64576200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:64575600-64576400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr2:64575600-64576600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:64575600-64576600	Enhancers	NHDF-Ad	bronchial
18	chr2:64575600-64576600	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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