Variant report

Variant	rs1020401
Chromosome Location	chr12:118223813-118223814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WSB2-5	chr12:118223797-118224219	l_737_NR_024246

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10744903	0.83[AMR][1000 genomes]
rs10744904	0.83[AMR][1000 genomes]
rs10744905	0.81[AMR][1000 genomes]
rs10774952	0.83[ASN][1000 genomes]
rs10774953	0.83[AMR][1000 genomes]
rs10774954	0.83[AMR][1000 genomes]
rs10774955	0.83[AMR][1000 genomes]
rs10774956	0.81[AMR][1000 genomes]
rs10774957	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10774959	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11068676	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1318179	0.87[CEU][hapmap]
rs1812316	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1986790	0.83[AMR][1000 genomes]
rs4766873	0.83[AMR][1000 genomes]
rs4767616	0.83[AMR][1000 genomes]
rs4767617	0.82[AMR][1000 genomes]
rs4767618	0.83[AMR][1000 genomes]
rs4767619	0.83[AMR][1000 genomes]
rs7296788	0.92[ASN][1000 genomes]
rs7315728	0.81[ASN][1000 genomes]
rs764402	0.83[AMR][1000 genomes]
rs7957795	0.81[AMR][1000 genomes]
rs7958901	0.81[AMR][1000 genomes]
rs7959050	0.81[AMR][1000 genomes]
rs7963245	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs921061	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs921062	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs979721	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs979722	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs979723	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118210000-118230800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links