Variant report

Variant	rs7296788
Chromosome Location	chr12:118205698-118205699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1020401	0.92[ASN][1000 genomes]
rs10774952	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10774957	0.94[ASN][1000 genomes]
rs10774959	0.93[ASN][1000 genomes]
rs11068676	0.85[ASN][1000 genomes]
rs1812316	0.94[ASN][1000 genomes]
rs7315728	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7963245	0.95[ASN][1000 genomes]
rs921061	0.85[ASN][1000 genomes]
rs921062	0.85[ASN][1000 genomes]
rs979721	0.85[ASN][1000 genomes]
rs979722	0.85[ASN][1000 genomes]
rs979723	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899544	chr12:118191949-118206789	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118197800-118207800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:118202800-118209600	Weak transcription	Pancreas	Pancrea
3	chr12:118205600-118206800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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