Variant report

Variant	rs10205411
Chromosome Location	chr2:73428867-73428868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10174699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10177179	1.00[AFR][1000 genomes]
rs10184355	1.00[AFR][1000 genomes]
rs10204954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10208619	1.00[AFR][1000 genomes]
rs12328431	1.00[AFR][1000 genomes]
rs13385256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13388239	1.00[AFR][1000 genomes]
rs13413623	1.00[AFR][1000 genomes]
rs2231438	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006801	chr2:73305056-73431711	Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73427200-73430800	Weak transcription	HepG2	liver
2	chr2:73428600-73429000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
3	chr2:73428600-73429000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr2:73428600-73429200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
5	chr2:73428600-73430200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr2:73428800-73429000	Bivalent/Poised TSS	NH-A	brain
7	chr2:73428800-73429200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr2:73428800-73429200	Bivalent Enhancer	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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