Variant report

Variant	rs10184355
Chromosome Location	chr2:73438273-73438274
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10174699	1.00[AFR][1000 genomes]
rs10177179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10193012	1.00[YRI][hapmap]
rs10204954	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10205411	1.00[AFR][1000 genomes]
rs10208619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12328431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13385256	1.00[AFR][1000 genomes]
rs13388239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13413623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13418681	1.00[YRI][hapmap]
rs2231438	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2776	chr2:73431854-73482304	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73435600-73438600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:73436800-73439800	Weak transcription	Spleen	Spleen
3	chr2:73437600-73439200	Enhancers	HepG2	liver
4	chr2:73438000-73439600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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