Variant report

Variant	rs10206205
Chromosome Location	chr2:113717837-113717838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113506583..113509292-chr2:113716187..113718342,2	K562	blood:
2	chr2:113504578..113507107-chr2:113715041..113717876,2	MCF-7	breast:
3	chr2:113716265..113720193-chr2:113720770..113723429,3	MCF-7	breast:
4	chr2:113717657..113719208-chr2:113861543..113864051,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10178396	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10188477	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10188765	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10221977	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10864908	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11123153	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11123154	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11674086	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11676013	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs11690399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11897907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13029531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13029703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1562305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1867827	0.90[ASN][1000 genomes]
rs1867828	0.91[ASN][1000 genomes]
rs2305151	0.92[ASN][1000 genomes]
rs4254516	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58593758	0.92[ASN][1000 genomes]
rs6747618	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7559466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7578034	0.99[ASN][1000 genomes]
rs7580877	0.96[ASN][1000 genomes]
rs879710	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs879711	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv2880	chr2:113716802-113736921	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113715800-113720600	Weak transcription	Fetal Intestine Small	intestine
2	chr2:113717200-113718000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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