Variant report

Variant	rs11676013
Chromosome Location	chr2:113728389-113728390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113719430..113721104-chr2:113727150..113729244,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10171072	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10184412	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10188765	0.82[ASN][1000 genomes]
rs10206205	0.89[ASN][1000 genomes]
rs11123154	0.92[ASN][1000 genomes]
rs11674086	0.92[ASN][1000 genomes]
rs11683399	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11690399	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs11695110	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11897907	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs12616801	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13029531	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs13029703	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs13033104	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1317913	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13418326	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1562305	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1867827	0.88[ASN][1000 genomes]
rs1867828	0.88[ASN][1000 genomes]
rs2305151	0.90[ASN][1000 genomes]
rs2305152	0.96[CEU][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35880601	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58593758	0.90[ASN][1000 genomes]
rs66591921	0.82[AMR][1000 genomes]
rs725139	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs725140	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7559466	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7578034	0.88[ASN][1000 genomes]
rs7580877	0.91[ASN][1000 genomes]
rs879710	0.84[ASN][1000 genomes]
rs879711	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv2880	chr2:113716802-113736921	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2753453	chr2:113726882-113730425	Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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