Variant report

Variant	rs10206765
Chromosome Location	chr2:31261859-31261860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11884697	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895540	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623059	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712307	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712308	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1862984	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1862985	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886301	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886302	0.83[EUR][1000 genomes]
rs4494793	0.83[EUR][1000 genomes]
rs4494794	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951962	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951963	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952034	0.83[EUR][1000 genomes]
rs4952035	0.84[EUR][1000 genomes]
rs4952037	0.82[EUR][1000 genomes]
rs4952039	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952041	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952042	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952044	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709060	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709214	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738622	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738843	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746878	0.84[EUR][1000 genomes]
rs6753030	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753943	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755188	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564975	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9653511	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31251400-31270000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:31260200-31265600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:31261800-31264400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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