Variant report

Variant	rs4952035
Chromosome Location	chr2:31266926-31266927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:31265375..31268101-chr2:31269640..31272936,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10165739	1.00[JPT][hapmap]
rs10206765	0.84[EUR][1000 genomes]
rs11884697	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11895540	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12617982	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12623059	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12712307	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12712308	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1530394	1.00[CHB][hapmap]
rs1862984	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1862985	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2886301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2886302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4494793	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4494794	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4951962	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4951963	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4952034	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4952037	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4952039	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4952041	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4952042	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4952044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6709060	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6709214	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6738622	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6738843	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6746878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753030	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6753943	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6755188	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7564975	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9653511	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31251400-31270000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:31262000-31272200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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