Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11690257	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs13420210	0.88[EUR][1000 genomes]
rs1347732	1.00[CHB][hapmap]
rs1595445	1.00[CHB][hapmap]
rs1595448	1.00[CHB][hapmap]
rs1595449	1.00[CHB][hapmap]
rs1595450	1.00[CHB][hapmap]
rs16823151	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16823158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs16823179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs16823182	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16823201	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16823203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16823207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16823222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16823227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16823234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16823235	1.00[EUR][1000 genomes]
rs16823236	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16823243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs2448980	1.00[CHB][hapmap]
rs2577649	1.00[CHB][hapmap]
rs2577660	1.00[CHB][hapmap]
rs2623409	1.00[CHB][hapmap]
rs2623410	1.00[CHB][hapmap]
rs2623430	1.00[CHB][hapmap]
rs2623432	1.00[CHB][hapmap]
rs2623436	1.00[CHB][hapmap]
rs833120	1.00[CHB][hapmap]
rs833122	1.00[CHB][hapmap]
rs833123	1.00[CHB][hapmap]
rs833153	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834481	chr2:183189758-183339577	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183298800-183320800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:183301000-183308200	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:183301200-183309200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:183301400-183309800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:183302800-183306400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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