Variant report

Variant	rs2577649
Chromosome Location	chr2:183228206-183228207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183220786..183225092-chr2:183225248..183228403,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10206828	1.00[CHB][hapmap]
rs1347732	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1595445	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1595448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1595449	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1595450	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16823158	1.00[JPT][hapmap]
rs16823179	1.00[JPT][hapmap]
rs16823201	1.00[JPT][hapmap]
rs16823203	1.00[JPT][hapmap]
rs16823207	1.00[JPT][hapmap]
rs16823222	1.00[JPT][hapmap]
rs16823227	1.00[JPT][hapmap]
rs16823234	1.00[JPT][hapmap]
rs16823236	1.00[JPT][hapmap]
rs16823243	1.00[JPT][hapmap]
rs2368294	1.00[JPT][hapmap]
rs2368295	1.00[JPT][hapmap]
rs2448980	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2577660	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623409	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623430	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623432	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2623436	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6747766	1.00[JPT][hapmap]
rs833120	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs833122	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs833123	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs833148	0.81[AFR][1000 genomes]
rs833153	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834481	chr2:183189758-183339577	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2577649	CXCL14	trans	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183224400-183233800	Weak transcription	Fetal Kidney	kidney
2	chr2:183225600-183235000	Weak transcription	NHLF	lung
3	chr2:183225600-183237400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr2:183226000-183231000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:183226400-183237200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr2:183226600-183230400	Weak transcription	A549	lung
7	chr2:183226600-183230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:183226600-183236800	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:183228200-183229200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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