Variant report

Variant	rs10207020
Chromosome Location	chr2:213107619-213107620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10048673	0.90[CHD][hapmap]
rs10048750	0.82[JPT][hapmap];0.84[YRI][hapmap];0.93[ASN][1000 genomes]
rs10048819	0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs10166172	0.83[CHD][hapmap]
rs10168128	0.94[ASN][1000 genomes]
rs10168303	0.94[ASN][1000 genomes]
rs10172782	0.92[CHB][hapmap]
rs10201835	0.94[ASN][1000 genomes]
rs10932428	0.87[CEU][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs11676942	0.93[ASN][1000 genomes]
rs11677095	0.93[ASN][1000 genomes]
rs11682936	0.93[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693640	0.86[CHD][hapmap]
rs11694300	0.91[ASN][1000 genomes]
rs11887771	0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs11896691	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11902860	0.96[ASN][1000 genomes]
rs12185587	0.86[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs12622947	0.86[CHD][hapmap]
rs13391312	0.90[CHD][hapmap]
rs13408933	0.82[CHB][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes]
rs13415721	0.93[ASN][1000 genomes]
rs13426969	0.98[ASN][1000 genomes]
rs13428714	0.96[ASN][1000 genomes]
rs13429136	0.82[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs1357136	0.89[ASN][1000 genomes]
rs1357137	0.89[ASN][1000 genomes]
rs1357138	0.82[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1402762	0.83[ASN][1000 genomes]
rs1402764	0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1402769	0.86[CEU][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs1521638	0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1521639	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1521641	0.82[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs1521642	0.93[ASN][1000 genomes]
rs1521643	0.93[ASN][1000 genomes]
rs1521644	0.93[ASN][1000 genomes]
rs1521645	0.93[ASN][1000 genomes]
rs1521649	0.86[CHD][hapmap]
rs1546718	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1546719	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1851285	0.86[ASN][1000 genomes]
rs1851286	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1915747	0.80[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs1948875	0.87[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1949651	0.81[ASN][1000 genomes]
rs1949652	0.90[ASN][1000 genomes]
rs1949653	0.89[ASN][1000 genomes]
rs1949654	0.89[ASN][1000 genomes]
rs1976839	0.89[ASN][1000 genomes]
rs2030474	0.90[ASN][1000 genomes]
rs2049180	0.90[CHD][hapmap]
rs2090862	0.90[CHD][hapmap]
rs2103001	0.90[CHD][hapmap]
rs2139971	0.96[ASN][1000 genomes]
rs4233985	0.82[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs4350692	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4375810	0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs4580336	0.82[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs4638732	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4672641	0.89[ASN][1000 genomes]
rs4673654	0.94[ASN][1000 genomes]
rs6718075	0.86[CHD][hapmap]
rs6724508	0.92[ASN][1000 genomes]
rs6727639	0.96[ASN][1000 genomes]
rs6742273	0.96[ASN][1000 genomes]
rs6755027	0.83[CHD][hapmap]
rs6755951	0.96[ASN][1000 genomes]
rs7560301	0.93[ASN][1000 genomes]
rs7581138	0.94[ASN][1000 genomes]
rs7592673	0.89[ASN][1000 genomes]
rs9288446	0.87[CEU][hapmap]
rs9288449	0.92[YRI][hapmap]
rs939224	0.82[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]
rs9653257	0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv584346	chr2:213067749-213258622	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv998615	chr2:213081893-213202228	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv536139	chr2:213081893-213202228	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv1007853	chr2:213087904-213134413	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10207020	RPE	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213107200-213107800	Enhancers	Fetal Heart	heart
2	chr2:213107400-213107800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:213107600-213107800	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links