Variant report

Variant	rs6755027
Chromosome Location	chr2:213053239-213053240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10048673	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap]
rs10048796	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs10166172	0.84[ASW][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.91[YRI][hapmap]
rs10184205	0.84[CHD][hapmap]
rs10196229	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10206443	0.81[JPT][hapmap]
rs10207020	0.83[CHD][hapmap]
rs10932424	0.81[CHD][hapmap]
rs10932428	0.80[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap]
rs11677623	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11686852	0.82[YRI][hapmap]
rs11693640	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11896691	0.83[CHD][hapmap]
rs12052282	0.91[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12185587	0.91[YRI][hapmap]
rs12622947	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs13391312	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs13407289	0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs13416059	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs13427258	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs13432680	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1357138	0.87[CHD][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap]
rs1357139	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs1402764	0.90[YRI][hapmap]
rs1402769	0.86[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap]
rs1467273	0.84[CHD][hapmap]
rs1521639	0.83[CHD][hapmap]
rs1521646	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1521649	0.86[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.80[TSI][hapmap];0.91[YRI][hapmap]
rs1521659	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs17344880	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1948875	0.80[CHD][hapmap]
rs2049180	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs2090862	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs2103001	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs4145960	0.86[CHD][hapmap]
rs4233985	0.87[CHD][hapmap]
rs4375810	0.91[YRI][hapmap]
rs4580336	0.83[CHD][hapmap]
rs4673657	0.82[YRI][hapmap]
rs6718075	0.90[CHD][hapmap];0.81[JPT][hapmap]
rs7608095	0.87[CHD][hapmap]
rs9288446	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9288447	0.81[JPT][hapmap]
rs9288449	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs939224	0.87[CHD][hapmap];0.83[MEX][hapmap]
rs9653257	0.86[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap]
rs9973372	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9973520	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9973523	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6755027	FN1	cis	cerebellum	SCAN
rs6755027	PIKFYVE	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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