Variant report

Variant	rs1021007
Chromosome Location	chr1:80155014-80155015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10747365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782697	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10874064	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11162784	0.84[EUR][1000 genomes]
rs11588272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12754713	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1524174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524178	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1524179	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524182	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1589752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842255	0.93[EUR][1000 genomes]
rs1904469	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987643	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103119	0.90[ASN][1000 genomes]
rs6413808	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6424669	1.00[ASN][1000 genomes]
rs6686487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535807	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012296	chr1:79945395-80300216	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546637	chr1:79984748-80159969	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1012286	chr1:80057078-81005153	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv535018	chr1:80057078-81005153	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1000792	chr1:80076146-81015283	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv546638	chr1:80131994-80353796	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv546639	chr1:80152599-80177947	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:80147600-80158600	Weak transcription	Gastric	stomach
2	chr1:80150400-80158600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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