Variant report
Variant | rs6424669 |
---|---|
Chromosome Location | chr1:80190866-80190867 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:80188934..80191207-chr1:80192005..80194869,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1021007 | 1.00[ASN][1000 genomes] |
rs10747365 | 1.00[ASN][1000 genomes] |
rs10782697 | 0.80[ASN][1000 genomes] |
rs10874064 | 0.80[ASN][1000 genomes] |
rs11588272 | 1.00[ASN][1000 genomes] |
rs12754713 | 0.91[ASN][1000 genomes] |
rs1524174 | 1.00[ASN][1000 genomes] |
rs1524178 | 0.91[ASN][1000 genomes] |
rs1524179 | 1.00[ASN][1000 genomes] |
rs1524182 | 1.00[ASN][1000 genomes] |
rs1589752 | 1.00[ASN][1000 genomes] |
rs1904469 | 1.00[ASN][1000 genomes] |
rs1976881 | 1.00[ASN][1000 genomes] |
rs1987643 | 1.00[ASN][1000 genomes] |
rs2103119 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs35490848 | 0.83[AFR][1000 genomes] |
rs6413808 | 0.85[ASN][1000 genomes] |
rs6686487 | 1.00[ASN][1000 genomes] |
rs72684203 | 0.95[EUR][1000 genomes] |
rs72684206 | 0.91[EUR][1000 genomes] |
rs7519703 | 1.00[ASN][1000 genomes] |
rs7535807 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012296 | chr1:79945395-80300216 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv1012286 | chr1:80057078-81005153 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | nsv535018 | chr1:80057078-81005153 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv1000792 | chr1:80076146-81015283 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | nsv546638 | chr1:80131994-80353796 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | esv3422555 | chr1:80159643-80191185 | Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:80185200-80192000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |