Variant report
Variant | rs10210198 |
---|---|
Chromosome Location | chr2:58253422-58253423 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000028116 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10171955 | 0.86[ASN][1000 genomes] |
rs10188390 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10496086 | 0.87[EUR][1000 genomes] |
rs10496087 | 0.87[EUR][1000 genomes] |
rs1078191 | 0.84[EUR][1000 genomes] |
rs11898024 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12465171 | 0.88[EUR][1000 genomes] |
rs12467842 | 0.87[EUR][1000 genomes] |
rs12470851 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12471043 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12478718 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs13386389 | 0.82[EUR][1000 genomes] |
rs1371212 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1401101 | 0.85[ASN][1000 genomes] |
rs1518403 | 0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17049299 | 0.87[ASN][1000 genomes] |
rs17049308 | 0.94[ASN][1000 genomes] |
rs17049312 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17049314 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17049316 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17049321 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17830749 | 0.93[EUR][1000 genomes] |
rs2118897 | 0.87[EUR][1000 genomes] |
rs34191187 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35876471 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3771203 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs55723561 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs55856965 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs61548822 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6545679 | 0.90[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs6732965 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs67484511 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs72808498 | 0.85[ASN][1000 genomes] |
rs72808501 | 0.85[ASN][1000 genomes] |
rs72810305 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs72810306 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs72810307 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs72810308 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72810316 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs72810317 | 0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs72810318 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs72810320 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs72810323 | 0.91[EUR][1000 genomes] |
rs72810325 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs72810332 | 0.82[EUR][1000 genomes] |
rs72810334 | 0.84[EUR][1000 genomes] |
rs72810337 | 0.81[EUR][1000 genomes] |
rs728574 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs968850 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834159 | chr2:58101262-58283655 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
2 | nsv525988 | chr2:58161520-58427786 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
3 | nsv874200 | chr2:58163178-58262016 | Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv999591 | chr2:58214871-58316147 | Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:58249600-58259800 | Weak transcription | Ovary | ovary |
2 | chr2:58251400-58272000 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
3 | chr2:58251600-58258800 | Weak transcription | Primary B cells from cord blood | blood |
4 | chr2:58251800-58258400 | Weak transcription | Primary B cells from peripheral blood | blood |
5 | chr2:58253000-58253800 | Weak transcription | GM12878-XiMat | blood |