Variant report

Variant	rs6545679
Chromosome Location	chr2:58234553-58234554
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10188390	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs10210198	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10496084	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs10496085	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10496086	0.82[CEU][hapmap]
rs10496087	0.82[CEU][hapmap]
rs11898024	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12463540	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs12470403	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs12470851	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12471043	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12473840	0.82[CEU][hapmap]
rs12476222	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs12478718	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1371212	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs1401101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1518396	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1518397	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1518398	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1518403	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs1607378	0.84[EUR][1000 genomes]
rs17049278	0.81[EUR][1000 genomes]
rs17049282	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs17049288	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs17049299	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17049308	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17049312	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17049314	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17049316	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17049394	0.82[CEU][hapmap]
rs17830749	0.82[CEU][hapmap]
rs34191187	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34821621	0.85[EUR][1000 genomes]
rs35876471	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55723561	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55856965	0.83[ASN][1000 genomes]
rs56136700	0.85[EUR][1000 genomes]
rs56370078	0.87[EUR][1000 genomes]
rs58995859	0.86[EUR][1000 genomes]
rs61548822	0.85[ASN][1000 genomes]
rs6719889	0.83[ASN][1000 genomes]
rs6732965	0.85[ASN][1000 genomes]
rs67484511	0.83[ASN][1000 genomes]
rs6755324	1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6758465	0.83[EUR][1000 genomes]
rs67880350	0.85[EUR][1000 genomes]
rs67919965	0.85[EUR][1000 genomes]
rs67993785	0.81[EUR][1000 genomes]
rs72808484	0.81[EUR][1000 genomes]
rs72808485	0.81[EUR][1000 genomes]
rs72808488	0.86[EUR][1000 genomes]
rs72808489	0.86[EUR][1000 genomes]
rs72808490	0.83[EUR][1000 genomes]
rs72808491	0.86[EUR][1000 genomes]
rs72808498	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72808501	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72810305	0.84[ASN][1000 genomes]
rs72810306	0.84[ASN][1000 genomes]
rs72810307	0.85[ASN][1000 genomes]
rs72810308	0.83[ASN][1000 genomes]
rs72810316	0.83[ASN][1000 genomes]
rs72810317	0.81[ASN][1000 genomes]
rs728574	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv525988	chr2:58161520-58427786	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874200	chr2:58163178-58262016	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv458041	chr2:58196110-58237724	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv582096	chr2:58196110-58237724	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv999591	chr2:58214871-58316147	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58234400-58234600	Active TSS	GM12878-XiMat	blood

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